Ligand validation:5BV3


M7G: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE

M7G is a Ligand Of Interest in 5BV3 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5BV3_M7G_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5BV3_M7G_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5BV3_M7G_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5BV3_M7G_A_401 92% 24% 0.067 0.9582.18 0.98 5 200100%1
5BV3_M7G_C_401 88% 20% 0.079 0.9532.28 1.15 5 100100%1
6TRQ_M7G_A_404 66% 13% 0.156 0.9622.54 1.48 5 653100%1
7JPE_M7G_A_303 88% 63% 0.096 0.9730.7 0.7 1 -00100%1
1EJH_M7G_B_1002 81% 22% 0.099 0.9522 1.24 6 400100%1
4OR4_M7G_A_501 80% 4% 0.12 0.9693.81 1.77 4 1000100%1
5KQS_M7G_A_301 75% 4% 0.116 0.9483.93 1.68 15 1100100%0.56
4TQC_M7G_B_1000 69% 1% 0.107 0.9215.7 1.93 13 800100%1