Ligand validation:2OK7


A2P: ADENOSINE-2'-5'-DIPHOSPHATE

A2P is a Ligand Of Interest in 2OK7 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2OK7_A2P_E_416Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2OK7_A2P_E_416Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2OK7_A2P_E_416Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2OK7_A2P_E_416 78% 43% 0.127 0.9711.02 1.18 1 210100%1
2OK7_A2P_A_416 74% 44% 0.146 0.9780.93 1.21 1 230100%1
2OK7_A2P_B_416 71% 45% 0.15 0.9730.88 1.24 1 220100%1
2OK7_A2P_C_416 70% 45% 0.161 0.9780.9 1.23 1 230100%1
2OK7_A2P_D_416 67% 44% 0.162 0.9720.9 1.27 1 220100%1
2OK7_A2P_F_416 63% 39% 0.164 0.961.01 1.38 2 400100%1
3JQQ_A2P_C_416 91% 42% 0.088 0.9750.96 1.28 1 250100%1
3JQP_A2P_B_416 71% 41% 0.147 0.9670.96 1.33 1 330100%1
1FND_A2P_A_316 97% 19% 0.065 0.9771.99 1.5 4 400100%0.9167
1FNC_A2P_A_316 95% 25% 0.071 0.9761.57 1.46 3 700100%8.33
8TFX_A2P_A_201 95% 7% 0.074 0.9792.93 1.85 9 500100%0.921
6O0W_A2P_A_201 94% 61% 0.075 0.9740.8 0.68 - 100100%1
5JH2_A2P_A_401 92% 34% 0.079 0.9681.25 1.36 3 520100%1