X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1CELNATIVE TRICHODERMA REESEI CELLOBIOHYDROLASE PDB ENTRY 1CEL

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18pH 8.0
Crystal Properties
Matthews coefficientSolvent content
4.2471

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.9α = 90
b = 102.9β = 90
c = 282γ = 90
Symmetry
Space GroupP 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray270IMAGE PLATEMARRESEARCH1993-07-30M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X11EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.24096.60.0690.069153.96379029
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.3292.40.2090.2095.93.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTNATIVE TRICHODERMA REESEI CELLOBIOHYDROLASE PDB ENTRY 1CEL2.23075122759296.60.180.23RANDOM30
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor20.4
p_staggered_tor16.6
p_scangle_it5.5
p_planar_tor4
p_scbond_it3.9
p_mcangle_it3.7
p_mcbond_it2.9
p_multtor_nbd0.25
p_singtor_nbd0.174
p_xyhbond_nbd0.154
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor20.4
p_staggered_tor16.6
p_scangle_it5.5
p_planar_tor4
p_scbond_it3.9
p_mcangle_it3.7
p_mcbond_it2.9
p_multtor_nbd0.25
p_singtor_nbd0.174
p_xyhbond_nbd0.154
p_chiral_restr0.122
p_planar_d0.034
p_angle_d0.031
p_bond_d0.012
p_plane_restr0.009
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6176
Nucleic Acid Atoms
Solvent Atoms420
Heterogen Atoms56

Software

Software
Software NamePurpose
DENZOdata reduction
Agrovatadata reduction
AMoREphasing
REFMACrefinement
Agrovatadata scaling