Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad3scma2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) CD1, alpha-3 domain mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ad3scma1 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain CD1, alpha-1 and alpha-2 domains mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ad3scma3 Artifacts Tags Tags Tags C-terminal Tags mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Bd3scmb_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) beta2-microglobulin mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Cd3scmc2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches mouse (Mus musculus ) [TaxId: 10090 ], human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd3scmc1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches mouse (Mus musculus ) [TaxId: 10090 ], human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd3scmd2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches mouse (Mus musculus ) [TaxId: 10090 ], human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd3scmd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches mouse (Mus musculus ) [TaxId: 10090 ], human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054657 3000071 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMHC antigen-recognition domain 8037146 3000521 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054571 3000071 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054547 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AC1-set_2e3scmA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_2ECOD (1.6)
AMHC_Ie3scmA2 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: MHC_IECOD (1.6)
BC1-set_2e3scmB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_2ECOD (1.6)
CDUF1968e3scmC3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: DUF1968ECOD (1.6)
CV-set_4e3scmC4 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_4ECOD (1.6)
DC1-sete3scmD2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)
DV-set_3e3scmD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_3ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
CD1D1 I-ALPHA-LIKE Mus musculus (house mouse) - - RPI-MH1Like MH1LIKE-ALPHA-LIKE_B2M IMGT (202447-0)
CD1D1 B2M Mus musculus (house mouse) B2M*01 C-LIKE-DOMAIN C-LIKE RPI-MH1Like MH1LIKE-ALPHA-LIKE_B2M IMGT (202447-0)
TR TRAV11*02-TRAJ18*01, TRBV19*01 TR-ALPHA Chimeric (chimeric) TRAV11*02, TRAJ18*01, TRAC*01 V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA TR TR-ALPHA_BETA-2 IMGT (202447-0)
TR TRAV11*02-TRAJ18*01, TRBV19*01 TR-BETA-2 Chimeric (chimeric) TRBV19*01, TRBJ1-1*01, TRBC2*01, TRBC2*02 V-DOMAIN V-BETA, C-DOMAIN C-BETA-2 TR TR-ALPHA_BETA-2 IMGT (202447-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domain- Domain
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domain- Domain
PF09291Domain of unknown function (DUF1968) (DUF1968)Domain of unknown function (DUF1968)Members of this family are found in mammalian T-cell antigen receptor, and adopt an immunoglobulin-like beta-sandwich fold, with seven strands in two beta-sheets in a Greek-key topology. Their exact function has not, as yet, been determined.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Antigen-presenting glycoprotein CD1d1
Beta-2-microglobulin
NKT TCR Valpha14 chain-
NKT TCR autoreactive-Vbeta6 chain---