Download MendeleyCrystal Structure of 7-cyano-7-deazaguanine reductase, QueF from Vibrio cholerae complexed with NADP and PreQ
Kim, Y., Zhou, M., Gu, M., Anderson, W.F., Joachimiak, A., CSGIDTo be published.
3UXV
Crystal Structure of 7-cyano-7-deazaguanine reductase, QueF from Vibrio cholerae complexed with NADP and PreQ
- PDB DOI: https://doi.org/10.2210/pdb3UXV/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Vibrio cholerae O1 biovar El Tor str. N16961
- Expression System: Escherichia coli BL21
- Mutation(s): Yes
- Deposited: 2011-12-05 Released: 2011-12-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.56 Å
- R-Value Free: 0.189
- R-Value Work: 0.161
- R-Value Observed: 0.162
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NADPH-dependent 7-cyano-7-deazaguanine reductase | 290 | Vibrio cholerae O1 biovar El Tor str. N16961 | Mutation(s): 1 Gene Names: queF, VCM66_0859 EC: 1.7.1.13 |  | |
UniProt | |||||
Find proteins for Q9KTK0 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KTK0 Go to UniProtKB: Q9KTK0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KTK0 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAP Query on NAP | G [auth B], K [auth D] | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N |  | ||
| GUN Query on GUN | H [auth B], J [auth C] | GUANINE C5 H5 N5 O UYTPUPDQBNUYGX-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | F [auth A], I [auth B], M [auth D], N [auth D], O [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | E [auth A], L [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.56 Å
- R-Value Free: 0.189
- R-Value Work: 0.161
- R-Value Observed: 0.162
- Space Group: P 1
- Diffraction Data: https://doi.org/10.18430/m33uxv
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.368 | α = 109.89 |
| b = 71.387 | β = 119.61 |
| c = 71.359 | γ = 99.46 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| SHELXS | phasing |
| MLPHARE | phasing |
| BUCCANEER | model building |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| BUCCANEER | phasing |
Entry History
Deposition Data
- Released Date: 2011-12-28 Deposition Author(s): Kim, Y., Zhou, M., Gu, M., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2011-12-28
Type: Initial release - Version 1.1: 2024-11-27
Changes: Data collection, Database references, Derived calculations, Structure summary
