1FUQ
FUMARASE WITH BOUND 3-TRIMETHYLSILYLSUCCINIC ACID
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1fuqa_ | All alpha proteins | L-aspartase-like | L-aspartase-like | L-aspartase/fumarase | Fumarase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1fuqb_ | All alpha proteins | L-aspartase-like | L-aspartase-like | L-aspartase/fumarase | Fumarase | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Lyase_1_N | e1fuqA3 | A: alpha arrays | X: L-aspartase N-terminal domain-like (From Topology) | H: L-aspartase N-terminal domain-like (From Topology) | T: L-aspartase N-terminal domain-like | F: Lyase_1_N | ECOD (1.6) |
A | FumaraseC_C | e1fuqA2 | A: alpha arrays | X: L-aspartase C-terminal domain-like (From Homology) | H: L-aspartase C-terminal domain-like | T: L-aspartase C-terminal domain-like | F: FumaraseC_C | ECOD (1.6) |
A | Lyase_1_C | e1fuqA1 | A: alpha arrays | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like (From Topology) | T: L-aspartase middle domain-like | F: Lyase_1_C | ECOD (1.6) |
B | Lyase_1_N | e1fuqB3 | A: alpha arrays | X: L-aspartase N-terminal domain-like (From Topology) | H: L-aspartase N-terminal domain-like (From Topology) | T: L-aspartase N-terminal domain-like | F: Lyase_1_N | ECOD (1.6) |
B | FumaraseC_C | e1fuqB2 | A: alpha arrays | X: L-aspartase C-terminal domain-like (From Homology) | H: L-aspartase C-terminal domain-like | T: L-aspartase C-terminal domain-like | F: FumaraseC_C | ECOD (1.6) |
B | Lyase_1_C | e1fuqB1 | A: alpha arrays | X: L-aspartase middle domain-like | H: L-aspartase middle domain-like (From Topology) | T: L-aspartase middle domain-like | F: Lyase_1_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.275.10 | Mainly Alpha | Orthogonal Bundle | Fumarase C | Chain B, domain 1 | CATH (4.3.0) |
A | 1.20.200.10 | Mainly Alpha | Up-down Bundle | Fumarase C | Chain A, domain 2 | CATH (4.3.0) |
A | 1.10.40.30 | Mainly Alpha | Orthogonal Bundle | Ribonucleotide Reductase Protein R1 | domain 1 | CATH (4.3.0) |
B | 1.10.275.10 | Mainly Alpha | Orthogonal Bundle | Fumarase C | Chain B, domain 1 | CATH (4.3.0) |
B | 1.20.200.10 | Mainly Alpha | Up-down Bundle | Fumarase C | Chain A, domain 2 | CATH (4.3.0) |
B | 1.10.40.30 | Mainly Alpha | Orthogonal Bundle | Ribonucleotide Reductase Protein R1 | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00206 | Lyase (Lyase_1) | Lyase | - | Domain | |
PF10415 | Fumarase C C-terminus (FumaraseC_C) | Fumarase C C-terminus | Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Kreb's cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000362 | Fumarate lyase family | Family | |
IPR022761 | Fumarate lyase, N-terminal | Domain | |
IPR024083 | Fumarase/histidase, N-terminal | Homologous Superfamily | |
IPR005677 | Fumarate hydratase, class II | Family | |
IPR008948 | L-Aspartase-like | Homologous Superfamily | |
IPR018951 | Fumarase C, C-terminal | Domain | |
IPR020557 | Fumarate lyase, conserved site | Conserved Site |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
fumarate hydratase (class II) M-CSA #569 | Fumarase catalyses the reversible stereospecific hydration/dehydration of fumarate to L-malate during Kreb's cycle. Fumarase C is a member of the class II enzymes, a family which also includes aspartase, adenylosuccinate lyase and arginosuccinate, with high sequence similarity among its members. Fumarse C differs from the class I fumarase A and B enzymes in its lack of an apparent iron sulphur cluster. | Defined by 4 residues: HIS:A-188SER:B-318LYS:B-324GLU:B-331 EC: 4.2.1.2 (PDB Primary Data) |